single-cell Data Analysis and VISualization scDAVIS
IMPaCT-Data es el programa de IMPaCT que persigue apoyar el desarrollo de un sistema común, interoperable e integrado, de recogida y análisis de datos clínicos y moleculares aportando para ello el conocimiento y los recursos disponibles en el Sistema Español de Ciencia y Tecnología. Este desarrollo permitirá dar respuesta a preguntas de investigación a partir de los diferentes sistemas de información clínica y molecular disponibles. Fundamentalmente, persigue que los investigadores puedan disponer de una perspectiva poblacional basada en datos individuales.
scDAVIS is a web-based tool for the analysis and visualization of different modalities of single-cell omics data:
IMPACT scDAVIS is coupled with access control for IMPACT users only. Contact IMPACT CNIC Team to get access.
In scDAVIS you can (1) Upload previously processed data. (2) Load published analysis (currently, 4 public datasets), searchable through a keyword-based search engine. (3) Download analysis, exporting data for future reanalysis. (4) QC-Stats with basic information about cells and features/genes profiled (5) Plots for visualization of results: Dim-Plots, Violin-Plots, Bar-Plots, Heatmaps, Scatter-Plots and Dot-Plots. (6) Finally, scDAVIS incorporates interactive tools for results representation, statistical contrasts, data filtering, and manual annotation/correction.
Importantly, scDAVIS will be also a repository of publicly available and IMPACT resource single-cell experiments, allowing further exploration and reuse of the data, in line with the compliance of FAIR principles. Also, it can serve as a repository to share single-cell data with the community and to ease integration of different datasets.
To permanently add a dataset to IMPACT scDAVIS repository and share it with other project members contact IMPACT CNIC Team for instructions.
This tool was created by the CNIC Bioinformatics Unit
Basic info
Number of cells
Number of reads per cells
Number of genes